How does Atlas detect if my `bun test` command is stuck?

Atlas runs your `bun test` command with a timeout via its `bash` tool. If the command doesn't complete within that time, Atlas analyzes the termination and reports in the `shell_metadata` block whether it was genuinely slow or waiting for interactive input.

What if `bun install` is asking for input and hanging my script?

If Atlas diagnoses `bun install` as 'blocked on stdin', you should re-run the command with non-interactive flags, such as `bun install -y`, to automatically confirm any prompts and allow the installation to complete.

Can Atlas help me optimize a slow `bun build` process?

Atlas can help diagnose if `bun build` is genuinely slow. If it is, Atlas will suggest increasing the timeout. While Atlas doesn't directly optimize the build process, it ensures you're not wasting time debugging a silent hang, allowing you to focus on performance improvements.

How does Atlas ensure my Bun project files are safe during diagnosis?

Atlas operates with permission-gated tools, meaning every action, including running `bash` commands or reading files, requires your explicit approval. Any proposed file edits, such as replacing Node shims with `Bun.serve` APIs, are presented as a unified diff for your review before being written.

What if I accidentally abort a `bun run` script with Atlas?

If you manually interrupt a `bun run` script executed by Atlas, the `shell_metadata` block will explicitly state 'User aborted the command'. This clearly distinguishes your intentional interrupt from a timeout-based termination, providing accurate context.

Does Atlas understand Bun-specific APIs like `Bun.file` or `bun:sqlite`?

Yes, Atlas builds its code index using AST declarations via tree-sitter, allowing it to understand and expose Bun-native APIs like `Bun.file`, `Bun.serve`, and `bun:sqlite`. This enables it to suggest relevant changes and interact intelligently with your Bun codebase.

How does Atlas handle `package.json` scripts that might hang?

Atlas treats `package.json` scripts like any other command. If `atlas bash 'bun run myscript'` hangs, Atlas will diagnose whether 'myscript' is slow or blocked on input, providing the same clear guidance to resolve the issue, whether by increasing timeout or using non-interactive flags.

Diagnose a Hanging or Long-Running Command in Bun with Atlas in 2026

Atlas helps Bun developers in 2026 quickly diagnose whether a `bun test`, `bun install`, or any `package.json` script is genuinely slow or silently blocked on interactive input. By running the command through Atlas's `bash` tool, you receive explicit feedback in the `shell_metadata` block, guiding you to either increase the timeout or use non-interactive flags to resolve the hang.

How Atlas Diagnoses Hanging Bun Commands in 2026

In 2026, Atlas provides a precise diagnosis for hanging Bun commands by racing every execution against a configurable timeout. When a `bun test` or `bun install` command exceeds this limit, Atlas's `bash` tool generates a `shell_metadata` block, explicitly detailing whether the command was genuinely slow or silently blocked on interactive input.

Atlas's core capability for diagnosing hanging commands in Bun projects relies on its integrated `bash` tool. When you ask Atlas to execute a Bun command, such as `bun run build` or `bun test`, it wraps the execution with a timeout. If the command does not complete within the specified duration, Atlas does not simply kill it; instead, it analyzes the termination. The resulting `shell_metadata` block in Atlas's output provides a clear message: either the command was 'expected to take longer and is not waiting for interactive input' or it was 'blocked on stdin'. This explicit distinction is crucial for Bun developers, as it immediately tells you whether to allocate more time or address a prompt. This diagnostic precision saves significant debugging time, especially with Bun's near-instant iteration speeds.

Identifying Blocked Bun Scripts: `bun test`, `bun install`, and `package.json`

Atlas helps identify when specific Bun commands like `bun test`, `bun install`, or custom scripts defined in `package.json` are blocked on interactive input. This is a common scenario in 2026, where a command might silently wait for user confirmation, preventing automated workflows or CI/CD pipelines from completing.

Many Bun commands, particularly those involving setup or configuration, can prompt for user input. For instance, a `bun install` command might ask for confirmation on certain package resolutions, or a custom script in `package.json` might invoke an interactive utility. When Atlas's `bash` tool reports that a Bun command is 'blocked on stdin', it means the command is waiting for input that it is not receiving. This diagnosis is invaluable for Bun developers working with `bun.lock` and `package.json` files. Instead of guessing why a `bun test` suite isn't progressing, Atlas tells you directly. The solution often involves re-running the command with non-interactive flags such as `-y`, `--no-input`, or by setting environment variables that trigger a CI mode, ensuring the command can proceed without human intervention.

Resolving Slow or Blocked Bun Operations with Atlas Timeouts and Non-Interactive Flags

Once Atlas diagnoses a hanging Bun command, it provides clear instructions for resolution. If a `bun run dev` script is genuinely slow, you can retry it with a larger timeout value in milliseconds. If it's blocked on input, the solution involves re-running the command with non-interactive flags, a common fix in 2026 for automated Bun workflows.

Atlas streamlines the process of unblocking or accelerating Bun operations. If the `shell_metadata` indicates a command is 'genuinely slow' and 'not waiting for interactive input', Atlas will suggest retrying with an increased timeout. For example, if `bun build` is taking longer than expected due to a large project, you can simply instruct Atlas to re-execute it with a higher timeout value, specified in milliseconds. Conversely, if Atlas explicitly calls out the 'interactive-input case', the path to resolution is to re-run the problematic Bun command,be it `bun install` or a script using `Bun.serve`,with its non-interactive flags. These flags, like `-y` for 'yes' to all prompts or `--no-input`, prevent the command from pausing for user interaction, allowing it to complete successfully in an automated context. Atlas's explicit guidance ensures you apply the correct fix without guesswork.

Ensuring Safety and Review for Bun Projects with Atlas

Atlas prioritizes safety and transparency when interacting with your Bun projects in 2026. Every Atlas tool call, including `bash` and `read`, is permission-gated, requiring your explicit approval. This ensures that actions like running `bun test` or modifying `package.json` are always under your control, with a clear audit trail.

Working with Atlas in a Bun project provides robust safety mechanisms. Before Atlas executes any command, such as `bun fmt` to format code or `bun install` to manage dependencies, it presents a permission prompt. This allows you to review and approve or deny the action, ensuring no changes occur without your consent. Atlas operates with a read-only plan agent initially, drafting a strategy before switching to a build agent for execution. When Atlas proposes file edits, perhaps to replace a Node compatibility shim with a native `Bun.file` or `bun:sqlite` API, it computes a unified diff. This diff is surfaced for your approval, allowing you to inspect every proposed change before it's written to disk. Furthermore, Atlas reads your `git` branches, status, and diffs, and can snapshot file changes as `git` patches, providing a comprehensive rollback mechanism and full transparency over all modifications within your Bun codebase.

Step by step

01Run your potentially hanging Bun command through Atlas's `bash` tool, for example: `atlas bash 'bun run dev'`.
02Examine the `shell_metadata` block in Atlas's output when the command is killed by a timeout.
03Decide from the message whether the Bun command is genuinely slow or blocked on interactive input; Atlas explicitly calls out the interactive-input case.
04If the Bun command is blocked, re-run it with the tool's non-interactive flags (e.g., `bun install -y`, `bun run script --no-input`, or by setting CI environment variables) so it cannot prompt.
05If the Bun command is genuinely slow, retry it with a larger timeout value in milliseconds, as Atlas's message instructs, for example: `atlas bash --timeout 60000 'bun build'`.
06If you manually aborted the command, confirm the `shell_metadata` says 'User aborted the command' to distinguish it from a timeout.

Frequently asked questions

How does Atlas detect if my `bun test` command is stuck?: Atlas runs your `bun test` command with a timeout via its `bash` tool. If the command doesn't complete within that time, Atlas analyzes the termination and reports in the `shell_metadata` block whether it was genuinely slow or waiting for interactive input.
What if `bun install` is asking for input and hanging my script?: If Atlas diagnoses `bun install` as 'blocked on stdin', you should re-run the command with non-interactive flags, such as `bun install -y`, to automatically confirm any prompts and allow the installation to complete.
Can Atlas help me optimize a slow `bun build` process?: Atlas can help diagnose if `bun build` is genuinely slow. If it is, Atlas will suggest increasing the timeout. While Atlas doesn't directly optimize the build process, it ensures you're not wasting time debugging a silent hang, allowing you to focus on performance improvements.
How does Atlas ensure my Bun project files are safe during diagnosis?: Atlas operates with permission-gated tools, meaning every action, including running `bash` commands or reading files, requires your explicit approval. Any proposed file edits, such as replacing Node shims with `Bun.serve` APIs, are presented as a unified diff for your review before being written.
What if I accidentally abort a `bun run` script with Atlas?: If you manually interrupt a `bun run` script executed by Atlas, the `shell_metadata` block will explicitly state 'User aborted the command'. This clearly distinguishes your intentional interrupt from a timeout-based termination, providing accurate context.
Does Atlas understand Bun-specific APIs like `Bun.file` or `bun:sqlite`?: Yes, Atlas builds its code index using AST declarations via tree-sitter, allowing it to understand and expose Bun-native APIs like `Bun.file`, `Bun.serve`, and `bun:sqlite`. This enables it to suggest relevant changes and interact intelligently with your Bun codebase.
How does Atlas handle `package.json` scripts that might hang?: Atlas treats `package.json` scripts like any other command. If `atlas bash 'bun run myscript'` hangs, Atlas will diagnose whether 'myscript' is slow or blocked on input, providing the same clear guidance to resolve the issue, whether by increasing timeout or using non-interactive flags.

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